CONDITIONS OF USE
MGI data are incorporated in these files; MGI software and data are copyrighted and use for commercial purpose is prohibited without the prior express written permission of the Jackson Laboratory. See
here for details.
We recommend that data be refreshed frequently (at least monthly, as new strains are added each month), and the date last updated should be included with any public display of the data provided here.
Proper attribution to the MMRRC and MGI programs should be included in any public display of the data provided here.
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THE JACKSON LABORATORY MAKES NO REPRESENTATION ABOUT THE SUITABILITY OR ACCURACY OF THIS SOFTWARE OR DATA FOR ANY PURPOSE, AND MAKES NO WARRANTIES, EITHER EXPRESS OR IMPLIED, INCLUDING MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE OR THAT THE USE OF THIS SOFTWARE OR DATA WILL NOT INFRINGE ANY THIRD PARTY PATENTS, COPYRIGHTS, TRADEMARKS, OR OTHER RIGHTS. THE SOFTWARE AND DATA ARE PROVIDED "AS IS".
SUMMARY DESCRIPTION OF DATA
- For each Strain ID - Strain Designation - Strain Type combination, there will be one or more lines in the file.
- If a Strain carries more than one mutation, each Mutation description, i.e., the set: (Mutation Type - Chromosome - Gene Symbol - Gene Name - Allele Symbol - Allele Name) will require a separate line.
| Column | Description | Sample Data |
|---|---|---|
| Strain/Stock ID | The unique ID used by your site to represent this strain. Format is MMRRC: 6 digit ID-abbreviation for holding center. | 32883-JAX |
| Strain/Stock Designation | Full strain name. Superscripted portions of the name are enclosed in < >. | STOCK Gata4tm2(Gata4)Wtp/Mmjax |
| Strain Type | Type of strain, comma-separated list. See below for the accepted list of strain types. | UN |
| State | State in which the strain is held. Like strain type, if a strain is held in multiple states at a given site, it should be included as a comma-separated list. See below for strain state abbreviations. | LM,EM |
| MGI Allele Accession ID | his is the MGI Accession ID for the Allele. Use of this field should make providing allele symbol and name unnecessary. | MGI:1857241 |
| Allele Symbol | Allele associated with this gene and strain. If a strain carries multiple alleles, a separate line is required for each. | Gata4 |
| Allele Name | Name of the Allele | GATA binding protein 4 / targeted mutation 2, William T Pu |
| Mutation Type | For each mutant allele, specifies the type of mutation that it represents. Usually there will be only one mutation type per Allele. Should there be an exception to this rule, these should be submitted as a comma-separated list. See below for mutation type abbreviations. | TM |
| Chromosome | Chromosome on which the Gene is located. | 14 |
| MGI Gene Accession ID | This is the MGI Accession ID for the Gene. Use of this field should make providing gene symbol and name unnecessary. (Optional) | MGI:97848 |
| Gene Symbol | Gene Symbol for mutation carried in this strain. If a strain carries multiple gene mutations, a separate line is required for each | Gata4 |
| Gene Name | Name of the Gene | GATA binding protein 4 |
| URL | Link to MMRRC strain data sheet | http://www.mmrrc.org/strains/32883/032883.html |
| MPT IDs | Contains all Mammalian Phenotype Term ID(s) linked to this strain, each term separated from the previous by a space | 293594 83359 4654427 |
| Strain Type | Abbreviation |
|---|---|
| IS | inbred strain |
| SEG | segregating inbred strain |
| MSR | mutant strain |
| MSK | mutant stock |
| WDS | wild-derived inbred strain |
| COI | coisogenic strain |
| CON | congenic strain |
| CSS | consomic or chromosome substitution strain |
| RI | recombinant inbred (RI) |
| RC | recombinant congenic (RC) |
| MAH | major histocompatibility congenic |
| MIH | minor histocompatibility congenic |
| NON | noninbred stock |
| CCO | closed colony |
| UN | unclassified |
| Strain State | Abbreviation |
|---|---|
| LM | ive mouse |
| OV | cryopreserved ovaries |
| EM | cryopreserved embryos |
| SP | cryopreserved or freeze-dried sperm |
| ES | ES cell lines |
| Mutation Type | Abbreviation |
|---|---|
| SM | spontaneous mutation |
| TM | targeted mutation |
| TG | transgenic |
| GT | gene trap |
| CI | chemically induced mutation |
| RAD | radiation induced mutation |
| CH | chromosomal aberration |
| RB | Robertsonian translocation |
| TL | reciprocal translocation |
| TP | transposition |
| INV | inversion |
| INS | insertion |
| DEL | deletion |
| DP | duplication |
| OTH | other |
The MMRRC is a collaborative effort, funded by grants from the NIH
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